Make sure you have cloned the mysql-administrator, mysql-gui-common, and mysql-query-browser trees, and that their local directories are located in the same directory, for example in Personal Files\MySQLGUI\.

The source files and libraries should be placed into the following tree structure:

  Working Directory
  |
  |- mysql-administrator
  |- mysql-gui-common
  |- mysql-query-browser
  |- mysql-gui-win-res
     |
     |-include
     | |
     | |-glib-2.0
     | |-java
     | | |
     | | |-win32
     | |
     | |-libxml
     | |-lua
     | |-mysql
     | |-pcre
     | |-windows
     |
     |-lib
       |
       |-glib-2.0
       |-java
       |-libxml
       |-lua
       |-mysql
       |-pcre
       |-windows